instalacion =========== 1. instalar netbeans 2. glassfish 312 3. bajar source y configurar netbeans hasta oder compilar 3.1 pf11 para hacer build y copiar el war de dist de netbeans a glassfish. 4.Generar usuario en postgre para acceso a base DVN C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: ^C C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: IngrÚsela nuevamente: createuser: no se pudo conectar a la base de datos postgres: FATAL: no hay una línea en pg_hba.conf para «::1», usuario «mhopp», base de datos «postgres», SSL inactivo C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: IngrÚsela nuevamente: createuser: no se pudo conectar a la base de datos postgres: FATAL: no hay una línea en pg_hba.conf para «::1», usuario «mhopp», base de datos «postgres», SSL inactivo C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: IngrÚsela nuevamente: Contrase±a: createuser: no se pudo conectar a la base de datos postgres: FATAL: la autentif icación password falló para el usuario «mhopp» C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: ^C C:\postgre92\bin>createuser.exe -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: IngrÚsela nuevamente: Contrase±a: createuser: no se pudo conectar a la base de datos postgres: FATAL: la autentif icación password falló para el usuario «mhopp» 4.1.Creando un usuario Postgres para W7 con grupo administrador: C:\Users\postgres.10-020>cd C:\postgre92\bin C:\postgre92\bin>createuser -SrdPE usuarioDVN Ingrese la contrase±a para el nuevo rol: IngrÚsela nuevamente: Contrase±a: createuser: no se pudo conectar a la base de datos postgres: FATAL: la autentif icación password falló para el usuario «postgres» C:\postgre92\bin>createuser -SrdPE usuDVN Ingrese la contrase±a para el nuevo rol: argento1 IngrÚsela nuevamente:argento1 Contrase±a: C:\postgre92\bin> ====================================================================================== 5. Cambiar C:\mhopp.CONICET\Mis documentos\NetBeansProjects\dvn-app\trunk\tools\installer\dvninstall\domain.xml.TEMPLATE para mandar a glassfish con usuario y base %POSTGRES_SERVER=localhost %POSTGRES_DATABASE%=DVN %POSTGRES_PORT%=5432 %POSTGRES_USER%=usuDVN %POSTGRES_PASSWORD%=argento1 %MAIL_SERVER%=berni.conicet.gov.ar %DEF_MEM_SIZE%=1G -Xmx1g %HOST_DNS_ADDRESS%=localhost %GF_SPEC_INDICATOR%=52b3c415-7aef-4474-9974-04239a8378eb 6.C:\glassfish312\glassfish\lib copiar postgresql-9.1-902.jdbc4.jar 7.script sql para bd En C:\mhopp.CONICET\Mis documentos\NetBeansProjects\dvn-app\trunk\src\DVN-EJB\src\conf\referenceData.sql 8. localhost:8282/dvn deberia arrancar. 9. para hacer un admin set en la tabla vdcuser con ek id del usuario el id del rol = 2 (admin) update vdcuser set networkrole_id=2 where id=10 10. desde postgre 8.2 se requiere, GRANT USAGE, SELECT ON SEQUENCE studyid_seq TO PUBLIC; 11.problema con PK cuando se quiere agregar un archivo al estudio. probando con GRANT ALL ON ALL SEQUENCES IN SCHEMA public TO "usuDVN"; no da resultado probando con GRANT ALL ON ALL SEQUENCES IN SCHEMA public TO postgres; no da resultado probando con GRANT ALL ON ALL SEQUENCES IN SCHEMA public TO mhopp; no da resultado - copiar los archivos dvninstall/working_directory a config del glasfish - copiar web-core.jar a lib del glassfish. (patch para glassfish 3.2) =============================================================================================================================================================== 12.R instalacion ATENCION:: Windows: There is a binary version of Rserve in the download section. Copy the file to the directory containing R.DLL. If you have more versions of R, make sure that you use the one most recently installed, becasue Rserve detects the location of $RHOME from the registry. Although Rserve works on Windows it is not recommended to use it on that platform. ================================================================================= Windows lacks important features that make the separation of namespaces possible, therefore Rserve for Windows works in cooperative mode only, that is only one connection at a time is allowed and all subsequent connections share the same namespace. Briefly: don't use Windows unless you really have to. There is a DCOM interface available for R, you may be better off with that solution. Ref: http://www.rforge.net/Rserve/doc.html Para DCOM: http://cran.r-project.org/contrib/extra/dcom/00ReadMe.html Installation instructions: ========================= -Install the latest version of R from your favorite CRAN mirror (refer to http://cran.r-project.org/ for more information). -Once you have R installed, download the package dvnextra.tar from this location: http://dvn.iq.harvard.edu/dist/R/dvnextra.tar en R tirar este comando por cada paquete a instalar: > install.packages("C:/temp/dvnextra/accuracy_1.35.tar.gz", type="source", INSTALL_opts=c("--no-test-load"), repos=NULL, dependencies=T, lib=.libPaths()[length(.libPaths())] ) * installing *source* package 'accuracy' ... ** package 'accuracy' successfully unpacked and MD5 sums checked ** libs ERROR: compilation failed for package 'accuracy' * removing 'C:/Program Files/R/R-2.15.2/library/accuracy' Mensajes de aviso perdidos 1: comando ejecutado 'C:/PROGRA~1/R/R-215~1.2/bin/x64/R CMD INSTALL --no-test-load -l "C:/Program Files/R/R-2.15.2/library" "C:/temp/dvnextra/accuracy_1.35.tar.gz"' tiene estatus 1 2: In install.packages("C:/temp/dvnextra/accuracy_1.35.tar.gz", type = "source", : installation of package ‘C:/temp/dvnextra/accuracy_1.35.tar.gz’ had non-zero exit status Esto pasa por no instalar rtools - instalar rtools http://cran.r-project.org/bin/windows/Rtools/Rtools216.exe actualizar path (segun rtools.txt se actualiza solo pero no pasa) Finally, the Rtools installer will optionally edit your PATH variable as follows: PATH=c:\Rtools\bin;c:\Rtools\MinGW\bin;c:\R\bin; C:\Program Files\R\R-2.15.2\bin\x64>R CMD INSTALL --no-test-load -l "C:/Program Files/R/R-2.15.2/library" "C:/temp/dvnextra/accuracy_1.35.tar.gz" * installing *source* package 'accuracy' ... ** package 'accuracy' successfully unpacked and MD5 sums checked ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-215~1.2/etc/x64/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-215~1.2/etc/x64/Makeco nf CYGWIN environment variable option "nodosfilewarning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames gcc -m64 -I"C:/PROGRA~1/R/R-215~1.2/include" -DNDEBUG -I"d:/RCompile/CRANpkg /extralibs64/local/include" -DNONONBLOCK -O2 -Wall -std=gnu99 -mtune=core2 - c frexp.c -o frexp.o gcc: not found make: *** [frexp.o] Error 127 ERROR: compilation failed for package 'accuracy' * removing 'C:/Program Files/R/R-2.15.2/library/accuracy' agregar C:\Rtools\gcc-4.6.3\bin en path C:\Program Files\R\R-2.15.2\bin\x64>R CMD INSTALL --no-test-load -l "C:/Program Files/R/R-2.15.2/library" "C:/temp/dvnextra/Zelig_3.5.4.tar.gz.tar.gz" C:\Program Files\R\R-2.15.2\bin\x64>R CMD INSTALL --no-test-load -l "C:/Program Files/R/R-2.15.2/library" "C:/temp/dvnextra/UNF_1.16.tar.gz" C:\Program Files\R\R-2.15.2\bin\x64>R CMD INSTALL --no-test-load -l "C:/Program Files/R/R-2.15.2/library" "C:/temp/dvnextra/VDCutil_1.17.tar.gz" ERROR: dependencies 'R2HTML', 'VGAM' are not available for package 'VDCutil' * removing 'C:/Program Files/R/R-2.15.2/library/VDCutil' -instalar paquetes de dependencia desde rgui.exe (antes poner en las propiedades de arranque del shotcut "C:\Program Files\R\R-2.15.2\bin\x64\Rgui.exe" http_proxy=http://proxy.conicet.gov.ar:3128 http_proxy_user=ask Aviso: unable to move temporary installation ‘C:\Program Files\R\R-2.15.2\library\file1d6c416a3f6c\VGAM’ to ‘C:\Program Files\R\R-2.15.2\library\VGAM’ -copiar C:\Program Files\R\R-2.15.2\library\file1d6c416a3f6c\VGAM\libs\x64\Vgam.dll a C:\Program Files\R\R-2.15.2\bin\x64 (no se si esta bien)!!!!!!!!!!!!!!!!!!!!!!!1 - copiar a mano ‘C:\Program Files\R\R-2.15.2\library\file1d6c416a3f6c\VGAM’ a C:\Program Files\R\R-2.15.2\library\VGAM -incluir r/bin en path -copiar rserve.conf y pwd a \library\Rserve\libs/x64 modificar workdir a directorio rserve For Windows users, the configuration file defaults to being in the R installation directory, for example C:\Program Files\R\R-2.12.0\bin\i386\Rserv.cfg The configuration file may need to be created. Also, note the lack of "e" in the file names. You can put the password file anywhere to which Rserve has read access. However, it is a good idea to put it in the same directory as the configuration file e.g. as /etc/RServ.pwd or C:\Program Files\R\R-2.12.0\bin\i386\Rserv.pwd. Ref: http://dev.mygrid.org.uk/wiki/display/taverna/Rserve+installation+and+deployment In Win7 or Vista defaul option 'telnet' is not recognized as an internal or external command,operable program or batch file. To solve this, just enable it : Click Start, Control Panel, Programs, and then Turn Windows Features on or off. In the list, scroll down and select Telnet Client and click OK – volody Nov 3 '10 probar arranque rserve: C:\Program Files\R\R-2.15.2\library\Rserve\libs\x64>R CMD RServe Rserve: Ok, ready to answer queries. =======================================================================fin instalacion r=========================================================================